Interface to BioMart databases (e.g. Ensembl, COSMIC ,Wormbase and Gramene)

Documentation for package ‘biomaRt’ version 2.10.0

attributePages	Gives a summary of the attribute pages
exportFASTA	Exports getSequence results to FASTA format
filterOptions	Displays the filter options
filterType	Displays the filter type
getBM	Retrieves information from the BioMart database
getBMlist	Retrieves information from the BioMart database
getGene	Retrieves gene annotation information given a vector of identifiers
getLDS	Retrieves information from two linked datasets
getSequence	Retrieves sequences
getXML	Retrieves information from the BioMart database using an XML query
listAttributes	lists the attributes available in the selected dataset
listDatasets	lists the datasets available in the selected BioMart database
listFilters	lists the filters available in the selected dataset
listMarts	lists the avilable BioMart databases
Mart-class	Class Mart
NP2009code	Display the analysis code from the 2009 Nature protocols paper
show-method	Class Mart
useDataset	Select a dataset to use and updates Mart object
useMart	Connects to the selected BioMart database and dataset